Anaconda2Anaconda python distribution, python version 2.7
Anaconda3Anaconda python distribution, python version 3.5
RR For Statistical Computing
cmakeCross Platform Makefile Generator
cudaNVIDIA CUDA Toolkit (C, C++, cuda-gdb, cuda-memcheck, gpu accel)
cudnncuDNN | GPU-accelerated library for deep neural networks
gccGNU Compiler Collection (C, C++, Fortran), GNU Compiler Collection (C, C++, Fortran, Go)
goThe Go programming language is an open source project to make programmers more productive.
hdf5Tool suite for managing very large and complex data collections
jdkJava Development Kit
lbpmLattice Boltzmann simulator
luaLua Scripting Language
netcdfNetwork Common Data Form
openblasOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
openmpiOpen MPI
pgiPGI Compilers (C, C++, Fortran)
siloSilo is a library for IO
singularitySingularity is an open source container platform designed to be simple, fast, and secure.
szipSzip compression software
udunitsUDUNITS units package
zlibZlib compression software
AnacondaAnaconda python distribution, Anaconda python distribution with TensorFlow 1.7 and Pytorch
CGALThe Computational Geometry Algorithms Library is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry.
CLAPACKLAPACK linear algebra routines in C
JAGSJust Another Gibbs Sampler (JAGS)
LBPMLattice Boltzmann simulator
OpenFOAMOpen source CFD package
ParaViewParaView Scientific Visualization, Scientific Visualization
R-gpuGPU packages for R
R-parallelParallel packages for R
RSEMRSEM is a RNASeq utility
ViennaCLSet of header files for GPU support
abaqusAbaqus Research Edition
abinitABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.
abyssAssembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
allpathslgAssembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
amberAMBER Molecular Dynamics Simulations Software Package
ansysEngineering simulation software
ansysEMElectromagnetics simulation software
apbs-staticAdaptive Poisson Boltzmann Solver
atlasATLAS Tuned Linear Algebra (includes LAPACK)
autodocksuiteAutomated molecule docking tool
automakeautomake tools
bamtoolsBAMTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
bedtoolsBedtools is a fast, flexible toolset for genome arithmetic.
bisonGNU Software
boostBOOST template libraries
boost-mpiBOOST template libraries
bowtieShort read aligner
bowtie2Bowtie 2 Fast and Sensitive Read Alignment
bwaBurrows-Wheeler Aligner